USING: io io.files io.streams.duplex kernel sequences
sequences.private strings vectors words memoize splitting
-hints unicode.case ;
+hints unicode.case io.encodings.latin1 ;
IN: benchmark.reverse-complement
MEMO: trans-map ( -- str )
readln [ do-line (reverse-complement) ] [ show-seq ] if* ;
: reverse-complement ( infile outfile -- )
- <file-writer> >r <file-reader> r> <duplex-stream> [
+ latin1 <file-writer> >r latin1 <file-reader> r> <duplex-stream> [
500000 <vector> (reverse-complement)
] with-stream ;